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4758 right-hear 1
/*
2
 * Copyright (c) 2001-2003, David Janssens
3
 * Copyright (c) 2002-2003, Yannick Verschueren
4
 * Copyright (c) 2003-2005, Francois Devaux and Antonin Descampe
5
 * Copyright (c) 2005, Hervé Drolon, FreeImage Team
6
 * Copyright (c) 2002-2005, Communications and remote sensing Laboratory, Universite catholique de Louvain, Belgium
7
 * Copyright (c) 2006, Mónica Díez García, Image Processing Laboratory, University of Valladolid, Spain
8
 * All rights reserved.
9
 *
10
 * Redistribution and use in source and binary forms, with or without
11
 * modification, are permitted provided that the following conditions
12
 * are met:
13
 * 1. Redistributions of source code must retain the above copyright
14
 *    notice, this list of conditions and the following disclaimer.
15
 * 2. Redistributions in binary form must reproduce the above copyright
16
 *    notice, this list of conditions and the following disclaimer in the
17
 *    documentation and/or other materials provided with the distribution.
18
 *
19
 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS `AS IS'
20
 * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
21
 * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
22
 * ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
23
 * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
24
 * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
25
 * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
26
 * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
27
 * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
28
 * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
29
 * POSSIBILITY OF SUCH DAMAGE.
30
 */
31
#include 
32
#include 
33
#include 
34
#include "../libjp3dvm/openjpeg3d.h"
35
#ifdef _WIN32
36
#include "windirent.h"
37
#else
38
#include 
39
#endif /* _WIN32 */
40
 
41
 
42
 
43
void dump_volume(FILE *fd, opj_volume_t * vol) {
44
	int compno;
45
	fprintf(fd, "volume {\n");
46
	fprintf(fd, "  x0=%d, y0=%d, z0=%d, x1=%d, y1=%d, z1=%d\n", vol->x0, vol->y0, vol->z0,vol->x1, vol->y1,  vol->z1);
47
	fprintf(fd, "  numcomps=%d\n", vol->numcomps);
48
	for (compno = 0; compno < vol->numcomps; compno++) {
49
		opj_volume_comp_t *comp = &vol->comps[compno];
50
		fprintf(fd, "  comp %d {\n", compno);
51
		fprintf(fd, "    dx=%d, dy=%d, dz=%d\n", comp->dx, comp->dy, comp->dz);
52
		fprintf(fd, "    prec=%d\n", comp->prec);
53
		fprintf(fd, "    sgnd=%d\n", comp->sgnd);
54
		fprintf(fd, "  }\n");
55
	}
56
	fprintf(fd, "}\n");
57
}
58
 
59
/*
60
 * Get logarithm of an integer and round downwards.
61
 *
62
 * log2(a)
63
 */
64
static int int_floorlog2(int a) {
65
	int l;
66
	for (l = 0; a > 1; l++) {
67
		a >>= 1;
68
	}
69
	return l;
70
}
71
 
72
/*
73
 * Divide an integer by a power of 2 and round upwards.
74
 *
75
 * a divided by 2^b
76
 */
77
static int int_ceildivpow2(int a, int b) {
78
	return (a + (1 << b) - 1) >> b;
79
}
80
 
81
/*
82
 * Divide an integer and round upwards.
83
 *
84
 * a divided by b
85
 */
86
static int int_ceildiv(int a, int b) {
87
	return (a + b - 1) / b;
88
}
89
 
90
 
91
/* -->> -->> -->> -->>
92
 
93
PGX IMAGE FORMAT
94
 
95
<<-- <<-- <<-- <<-- */
96
 
97
 
98
unsigned char readuchar(FILE * f)
99
{
100
  unsigned char c1;
101
  fread(&c1, 1, 1, f);
102
  return c1;
103
}
104
 
105
unsigned short readushort(FILE * f, int bigendian)
106
{
107
  unsigned char c1, c2;
108
  fread(&c1, 1, 1, f);
109
  fread(&c2, 1, 1, f);
110
  if (bigendian)
111
    return (c1 << 8) + c2;
112
  else
113
    return (c2 << 8) + c1;
114
}
115
 
116
unsigned int readuint(FILE * f, int bigendian)
117
{
118
  unsigned char c1, c2, c3, c4;
119
  fread(&c1, 1, 1, f);
120
  fread(&c2, 1, 1, f);
121
  fread(&c3, 1, 1, f);
122
  fread(&c4, 1, 1, f);
123
  if (bigendian)
124
    return (c1 << 24) + (c2 << 16) + (c3 << 8) + c4;
125
  else
126
    return (c4 << 24) + (c3 << 16) + (c2 << 8) + c1;
127
}
128
/*****************************************/
129
static unsigned short ShortSwap(unsigned short v)
130
{
131
  unsigned char c1, c2;
132
  c1 = v & 0xff;
133
  c2 = (v >> 8) & 0xff;
134
  return (c1 << 8) + c2;
135
}
136
 
137
static unsigned int LongSwap (unsigned int i)
138
{
139
  unsigned char b1, b2, b3, b4;
140
  b1 = i & 255;
141
  b2 = ( i >> 8 ) & 255;
142
  b3 = ( i>>16 ) & 255;
143
  b4 = ( i>>24 ) & 255;
144
  return ((int)b1 << 24) + ((int)b2 << 16) + ((int)b3 << 8) + b4;
145
}
146
/*****************************************/
147
 
148
opj_volume_t* pgxtovolume(char *relpath, opj_cparameters_t *parameters) {
149
 
150
	FILE *f = NULL;
151
	int w, h, prec;
152
	unsigned long offset;
153
	int i, s, numcomps, maxvalue, sliceno, slicepos, maxslice = 0;
154
 
155
	OPJ_COLOR_SPACE color_space;
156
	opj_volume_cmptparm_t cmptparm;	// maximum of 1 component
157
	opj_volume_t * volume = NULL;
158
 
159
	char endian1,endian2,sign;
160
	char signtmp[32];
161
	char temp[32];
162
	opj_volume_comp_t *comp = NULL;
163
 
164
		DIR *dirp;
165
    struct dirent *direntp;
166
 
167
	char *tmp = NULL, *tmp2 = NULL,
168
		*point = NULL, *pgx = NULL;
169
	char tmpdirpath[MAX_PATH];
170
	char dirpath[MAX_PATH];
171
	char pattern[MAX_PATH];
172
	char pgxfiles[MAX_SLICES][MAX_PATH];
173
	int pgxslicepos[MAX_SLICES];
174
	char tmpno[3];
175
 
176
	numcomps = 1;
177
	color_space = CLRSPC_GRAY;
178
	sliceno = 0;
179
	maxvalue = 0;
180
	memset(pgxfiles, 0, MAX_SLICES * MAX_PATH * sizeof(char));
181
	memset(&cmptparm, 0, sizeof(opj_volume_cmptparm_t));
182
 
183
	/* Separación del caso de un único slice frente al de muchos */
184
	if ((tmp = strrchr(relpath,'-')) == NULL){
185
		//fprintf(stdout,"[INFO] A volume of only one slice....\n");
186
		sliceno = 1;
187
		maxslice = 1;
188
		strcpy(pgxfiles[0],relpath);
189
 
190
	} else {
191
		//Fetch only the path
192
		strcpy(tmpdirpath,relpath);
193
		if ((tmp = strrchr(tmpdirpath,'/')) != NULL){
194
			tmp++; *tmp='\0';
195
			strcpy(dirpath,tmpdirpath);
196
		} else {
197
			strcpy(dirpath,"./");
198
		}
199
 
200
		//Fetch the pattern of the volume slices
201
		if ((tmp = strrchr (relpath,'/')) != NULL)
202
			tmp++;
203
		else
204
			tmp = relpath;
205
        if ((tmp2 = strrchr(tmp,'-')) != NULL)
206
            *tmp2='\0';
207
		else{
208
			fprintf(stdout, "[ERROR] tmp2 ha dado null. no ha encontrado el * %s %s",tmp,relpath);
209
			return NULL;
210
		}
211
        strcpy(pattern,tmp);
212
 
213
		dirp = opendir( dirpath );
214
		if (dirp == NULL){
215
			fprintf(stdout, "[ERROR] Infile must be a .pgx file or a directory that contain pgx files");
216
			return NULL;
217
		}
218
 
219
		/*Read all .pgx files of directory */
220
		while ( (direntp = readdir( dirp )) != NULL )
221
		{
222
			/* Found a directory, but ignore . and .. */
223
			if(strcmp(".",direntp->d_name) == 0 || strcmp("..",direntp->d_name) == 0)
224
					continue;
225
 
226
			if( ((pgx = strstr(direntp->d_name,pattern)) != NULL) && ((tmp2 = strstr(direntp->d_name,".pgx")) != NULL) ){
227
 
228
				strcpy(tmp,dirpath);
229
				tmp = strcat(tmp,direntp->d_name);
230
 
231
				//Obtenemos el index de la secuencia de slices
232
				if ((tmp2 = strpbrk (direntp->d_name, "0123456789")) == NULL)
233
					continue;
234
				i = 0;
235
				while (tmp2 != NULL) {
236
					tmpno[i++] = *tmp2;
237
					point = tmp2;
238
					tmp2 = strpbrk (tmp2+1,"0123456789");
239
				}tmpno[i]='\0';
240
 
241
				//Comprobamos que no estamos leyendo algo raro como pattern.jp3d
242
				if ((point = strpbrk (point,".")) == NULL){
243
					break;
244
				}
245
				//Slicepos --> index de slice; Sliceno --> no de slices hasta el momento
246
				slicepos = atoi(tmpno);
247
				pgxslicepos[sliceno] = slicepos - 1;
248
				sliceno++;
249
				if (slicepos>maxslice)
250
					maxslice = slicepos;
251
 
252
				//Colocamos el slices en su posicion correspondiente
253
				strcpy(pgxfiles[slicepos-1],tmp);
254
			}
255
		}
256
 
257
	}/* else if pattern*.pgx */
258
 
259
	if (!sliceno) {
260
		fprintf(stdout,"[ERROR] No slices with this pattern founded !! Please check input volume name\n");
261
		return NULL;
262
	}
263
	/*if ( maxslice != sliceno) {
264
		fprintf(stdout,"[ERROR] Slices are not sequentially numbered !! Please rename them accordingly\n");
265
		return NULL;
266
	}*/
267
 
268
	for (s=0;s
269
	{
270
			int pos = maxslice == sliceno ? s: pgxslicepos[s];
271
			f = fopen(pgxfiles[pos], "rb");
272
			if (!f) {
273
				fprintf(stdout, "[ERROR] Failed to open %s for reading !\n", pgxfiles[s]);
274
				return NULL;
275
			}
276
			fprintf(stdout, "[INFO] Loading %s \n",pgxfiles[pos]);
277
 
278
			fseek(f, 0, SEEK_SET);
279
			fscanf(f, "PG%[ \t]%c%c%[ \t+-]%d%[ \t]%d%[ \t]%d",temp,&endian1,&endian2,signtmp,&prec,temp,&w,temp,&h);
280
 
281
			i=0;
282
			sign='+';
283
			while (signtmp[i]!='\0') {
284
				if (signtmp[i]=='-') sign='-';
285
				i++;
286
			}
287
 
288
			fgetc(f);
289
			if (endian1=='M' && endian2=='L') {
290
				cmptparm.bigendian = 1;
291
			} else if (endian2=='M' && endian1=='L') {
292
				cmptparm.bigendian = 0;
293
			} else {
294
				fprintf(stdout, "[ERROR] Bad pgx header, please check input file\n");
295
				return NULL;
296
			}
297
 
298
			if (s==0){
299
				/* initialize volume component */
300
 
301
				cmptparm.x0 = parameters->volume_offset_x0;
302
				cmptparm.y0 = parameters->volume_offset_y0;
303
				cmptparm.z0 = parameters->volume_offset_z0;
304
				cmptparm.w = !cmptparm.x0 ? (w - 1) * parameters->subsampling_dx + 1 : cmptparm.x0 + (w - 1) * parameters->subsampling_dx + 1;
305
				cmptparm.h = !cmptparm.y0 ? (h - 1) * parameters->subsampling_dy + 1 : cmptparm.y0 + (h - 1) * parameters->subsampling_dy + 1;
306
				cmptparm.l = !cmptparm.z0 ? (sliceno - 1) * parameters->subsampling_dz + 1 : cmptparm.z0 + (sliceno - 1) * parameters->subsampling_dz + 1;
307
 
308
				if (sign == '-') {
309
					cmptparm.sgnd = 1;
310
				} else {
311
					cmptparm.sgnd = 0;
312
				}
313
				cmptparm.prec = prec;
314
				cmptparm.bpp = prec;
315
				cmptparm.dcoffset = parameters->dcoffset;
316
				cmptparm.dx = parameters->subsampling_dx;
317
				cmptparm.dy = parameters->subsampling_dy;
318
				cmptparm.dz = parameters->subsampling_dz;
319
 
320
				/* create the volume */
321
				volume = opj_volume_create(numcomps, &cmptparm, color_space);
322
				if(!volume) {
323
					fclose(f);
324
					return NULL;
325
				}
326
				/* set volume offset and reference grid */
327
				volume->x0 = cmptparm.x0;
328
				volume->y0 = cmptparm.y0;
329
				volume->z0 = cmptparm.z0;
330
				volume->x1 = cmptparm.w;
331
				volume->y1 = cmptparm.h;
332
				volume->z1 = cmptparm.l;
333
 
334
				/* set volume data :only one component, that is a volume*/
335
				comp = &volume->comps[0];
336
 
337
			}//if sliceno==1
338
 
339
			offset = w * h * s;
340
 
341
			for (i = 0; i < w * h; i++) {
342
				int v;
343
				if (comp->prec <= 8) {
344
					if (!comp->sgnd) {
345
						v = readuchar(f);
346
					} else {
347
						v = (char) readuchar(f);
348
					}
349
				} else if (comp->prec <= 16) {
350
					if (!comp->sgnd) {
351
						v = readushort(f, cmptparm.bigendian);
352
					} else {
353
						v = (short) readushort(f, cmptparm.bigendian);
354
					}
355
				} else {
356
					if (!comp->sgnd) {
357
						v = readuint(f, cmptparm.bigendian);
358
					} else {
359
						v = (int) readuint(f, cmptparm.bigendian);
360
					}
361
				}
362
				if (v > maxvalue)
363
					maxvalue = v;
364
				comp->data[i + offset] = v;
365
 
366
			}
367
			fclose(f);
368
	} // for s --> sliceno
369
	comp->bpp = int_floorlog2(maxvalue) + 1;
370
	if (sliceno != 1)
371
		closedir( dirp );
372
	//dump_volume(stdout, volume);
373
	return volume;
374
}
375
 
376
 
377
int volumetopgx(opj_volume_t * volume, char *outfile) {
378
	int w, wr, wrr, h, hr, hrr, l, lr, lrr;
379
	int i, j, compno, offset, sliceno;
380
	FILE *fdest = NULL;
381
 
382
	for (compno = 0; compno < volume->numcomps; compno++) {
383
		opj_volume_comp_t *comp = &volume->comps[compno];
384
		char name[256];
385
		int nbytes = 0;
386
		char *tmp = outfile;
387
		while (*tmp) {
388
			tmp++;
389
		}
390
		while (*tmp!='.') {
391
			tmp--;
392
		}
393
		*tmp='\0';
394
		for(sliceno = 0; sliceno < volume->z1 - volume->z0; sliceno++) {
395
 
396
			if (volume->numcomps > 1) {
397
				sprintf(name, "%s%d-%d.pgx", outfile, sliceno+1, compno);
398
			} else if ((volume->z1 - volume->z0) > 1) {
399
				sprintf(name, "%s%d.pgx", outfile, sliceno+1);
400
			} else {
401
				sprintf(name, "%s.pgx", outfile);
402
			}
403
 
404
			fdest = fopen(name, "wb");
405
			if (!fdest) {
406
				fprintf(stdout, "[ERROR] Failed to open %s for writing \n", name);
407
				return 1;
408
			}
409
 
410
			fprintf(stdout,"[INFO] Writing in %s (%s)\n",name,volume->comps[0].bigendian ? "Bigendian" : "Little-endian");
411
 
412
			w = int_ceildiv(volume->x1 - volume->x0, volume->comps[compno].dx);
413
			wr = volume->comps[compno].w;
414
			wrr = int_ceildivpow2(volume->comps[compno].w, volume->comps[compno].factor[0]);
415
 
416
			h = int_ceildiv(volume->y1 - volume->y0, volume->comps[compno].dy);
417
			hr = volume->comps[compno].h;
418
			hrr = int_ceildivpow2(volume->comps[compno].h, volume->comps[compno].factor[1]);
419
 
420
			l = int_ceildiv(volume->z1 - volume->z0, volume->comps[compno].dz);
421
			lr = volume->comps[compno].l;
422
			lrr = int_ceildivpow2(volume->comps[compno].l, volume->comps[compno].factor[2]);
423
 
424
			fprintf(fdest, "PG %c%c %c%d %d %d\n", comp->bigendian ? 'M':'L', comp->bigendian ? 'L':'M',comp->sgnd ? '-' : '+', comp->prec, wr, hr);
425
			if (comp->prec <= 8) {
426
				nbytes = 1;
427
			} else if (comp->prec <= 16) {
428
				nbytes = 2;
429
			} else {
430
				nbytes = 4;
431
			}
432
 
433
			offset = (sliceno / lrr * l) + (sliceno % lrr);
434
			offset = wrr * hrr * offset;
435
			//fprintf(stdout,"%d %d %d %d\n",offset,wrr*hrr,wrr,w);
436
			for (i = 0; i < wrr * hrr; i++) {
437
				int v = volume->comps[0].data[(i / wrr * w) + (i % wrr) + offset];
438
				if (volume->comps[0].bigendian) {
439
					for (j = nbytes - 1; j >= 0; j--) {
440
                        char byte = (char) ((v >> (j * 8)) & 0xff);
441
                        fwrite(&byte, 1, 1, fdest);
442
					}
443
				} else {
444
					for (j = 0; j <= nbytes - 1; j++) {
445
                        char byte = (char) ((v >> (j * 8)) & 0xff);
446
						fwrite(&byte, 1, 1, fdest);
447
					}
448
				}
449
			}
450
 
451
			fclose(fdest);
452
		}//for sliceno
453
	}//for compno
454
 
455
	return 0;
456
}
457
 
458
/* -->> -->> -->> -->>
459
 
460
BIN IMAGE FORMAT
461
 
462
<<-- <<-- <<-- <<-- */
463
 
464
opj_volume_t* bintovolume(char *filename, char *fileimg, opj_cparameters_t *parameters) {
465
	int subsampling_dx =  parameters->subsampling_dx;
466
	int subsampling_dy =  parameters->subsampling_dy;
467
	int subsampling_dz =  parameters->subsampling_dz;
468
 
469
	int i, compno, w, h, l, numcomps = 1;
470
	int prec, max = 0;
471
 
472
//	char temp[32];
473
	char line[100];
474
	int bigendian;
475
 
476
	FILE *f = NULL;
477
	FILE *fimg = NULL;
478
	OPJ_COLOR_SPACE color_space;
479
	opj_volume_cmptparm_t cmptparm;	/* maximum of 1 component */
480
	opj_volume_t * volume = NULL;
481
	opj_volume_comp_t *comp = NULL;
482
 
483
	bigendian = 0;
484
	color_space = CLRSPC_GRAY;
485
 
486
	fimg = fopen(fileimg,"r");
487
	if (!fimg) {
488
		fprintf(stdout, "[ERROR] Failed to open %s for reading !!\n", fileimg);
489
		return 0;
490
	}
491
 
492
	fseek(fimg, 0, SEEK_SET);
493
	while (!feof(fimg)) {
494
        fgets(line,100,fimg);
495
		//fprintf(stdout,"%s %d \n",line,feof(fimg));
496
		if (strncmp(line,"Bpp",3) == 0){
497
			sscanf(line,"%*s%*[ \t]%d",&prec);
498
		} else if (strncmp(line,"Color",5) == 0){
499
			sscanf(line, "%*s%*[ \t]%d",&color_space);
500
		} else if (strncmp(line,"Dim",3) == 0){
501
			sscanf(line, "%*s%*[ \t]%d%*[ \t]%d%*[ \t]%d",&w,&h,&l);
502
		}
503
	}
504
	//fscanf(fimg, "Bpp%[ \t]%d%[ \t\n]",temp,&prec,temp);
505
	//fscanf(fimg, "Color Map%[ \t]%d%[ \n\t]Dimensions%[ \t]%d%[ \t]%d%[ \t]%d%[ \n\t]",temp,&color_space,temp,temp,&w,temp,&h,temp,&l,temp);
506
	//fscanf(fimg, "Resolution(mm)%[ \t]%d%[ \t]%d%[ \t]%d%[ \n\t]",temp,&subsampling_dx,temp,&subsampling_dy,temp,&subsampling_dz,temp);
507
 
508
	#ifdef VERBOSE
509
		fprintf(stdout, "[INFO] %d \t %d %d %d \t %3.2f %2.2f %2.2f \t %d \n",color_space,w,h,l,subsampling_dx,subsampling_dy,subsampling_dz,prec);
510
	#endif
511
	fclose(fimg);
512
 
513
	/* initialize volume components */
514
	memset(&cmptparm, 0, sizeof(opj_volume_cmptparm_t));
515
 
516
	cmptparm.prec = prec;
517
	cmptparm.bpp = prec;
518
	cmptparm.sgnd = 0;
519
	cmptparm.bigendian = bigendian;
520
	cmptparm.dcoffset = parameters->dcoffset;
521
	cmptparm.dx = subsampling_dx;
522
	cmptparm.dy = subsampling_dy;
523
	cmptparm.dz = subsampling_dz;
524
	cmptparm.w = w;
525
	cmptparm.h = h;
526
	cmptparm.l = l;
527
 
528
	/* create the volume */
529
	volume = opj_volume_create(numcomps, &cmptparm, color_space);
530
	if(!volume) {
531
		fprintf(stdout,"[ERROR] Unable to create volume");
532
		fclose(f);
533
		return NULL;
534
	}
535
 
536
	/* set volume offset and reference grid */
537
	volume->x0 = parameters->volume_offset_x0;
538
	volume->y0 = parameters->volume_offset_y0;
539
	volume->z0 = parameters->volume_offset_z0;
540
	volume->x1 = parameters->volume_offset_x0 + (w - 1) *	subsampling_dx + 1;
541
	volume->y1 = parameters->volume_offset_y0 + (h - 1) *	subsampling_dy + 1;
542
	volume->z1 = parameters->volume_offset_z0 + (l - 1) *	subsampling_dz + 1;
543
 
544
	/* set volume data */
545
	f = fopen(filename, "rb");
546
	if (!f) {
547
		fprintf(stdout, "[ERROR] Failed to open %s for reading !!\n", filename);
548
		return 0;
549
	}
550
 
551
	/* BINARY */
552
	for (compno = 0; compno < volume->numcomps; compno++) {
553
		int whl = w * h * l;
554
		/* set volume data */
555
		comp = &volume->comps[compno];
556
 
557
		/*if (comp->prec <= 8) {
558
			if (!comp->sgnd) {
559
                unsigned char *data = (unsigned char *) malloc(whl * sizeof(unsigned char));
560
				fread(data, 1, whl, f);
561
				for (i = 0; i < whl; i++) {
562
					comp->data[i] = data[i];
563
					if (comp->data[i] > max)
564
						max = comp->data[i];
565
				}
566
				free(data);
567
			} else {
568
				char *data = (char *) malloc(whl);
569
				fread(data, 1, whl, f);
570
				for (i = 0; i < whl; i++) {
571
					comp->data[i] = data[i];
572
					if (comp->data[i] > max)
573
						max = comp->data[i];
574
				}
575
				free(data);
576
			}
577
		} else if (comp->prec <= 16) {
578
			if (!comp->sgnd) {
579
                unsigned short *data = (unsigned short *) malloc(whl * sizeof(unsigned short));
580
				int leido = fread(data, 2, whl, f);
581
				if (!leido)	{
582
					free(data);	fclose(f);
583
					return NULL;
584
				}
585
 
586
				for (i = 0; i < whl; i++) {
587
					if (bigendian)	//(c1 << 8) + c2;
588
						comp->data[i] = data[i];
589
					else{			//(c2 << 8) + c1;
590
						comp->data[i] = ShortSwap(data[i]);
591
					}
592
					if (comp->data[i] > max)
593
						max = comp->data[i];
594
				}
595
				free(data);
596
			} else {
597
				short *data = (short *) malloc(whl);
598
				int leido = fread(data, 2, whl, f);
599
				if (!leido)	{
600
					free(data);	fclose(f);
601
					return NULL;
602
				}
603
				for (i = 0; i < whl; i++) {
604
					if (bigendian){	//(c1 << 8) + c2;
605
						comp->data[i] = data[i];
606
					}else{			//(c2 << 8) + c1;
607
						comp->data[i] = (short) ShortSwap((unsigned short) data[i]);
608
					}
609
					if (comp->data[i] > max)
610
						max = comp->data[i];
611
				}
612
				free(data);
613
			}
614
		} else {
615
			if (!comp->sgnd) {
616
                unsigned int *data = (unsigned int *) malloc(whl * sizeof(unsigned int));
617
				int leido = fread(data, 4, whl, f);
618
				if (!leido)	{
619
					free(data);	fclose(f);
620
					return NULL;
621
				}				for (i = 0; i < whl; i++) {
622
					if (!bigendian)
623
						comp->data[i] = LongSwap(data[i]);
624
					else
625
						comp->data[i] = data[i];
626
					if (comp->data[i] > max)
627
						max = comp->data[i];
628
				}
629
				free(data);
630
			} else {
631
				int leido = fread(comp->data, 4, whl, f);
632
				if (!leido)	{
633
					fclose(f);
634
					return NULL;
635
				}
636
				for (i = 0; i < whl; i++) {
637
					if (!bigendian)
638
						comp->data[i] = (int) LongSwap((unsigned int) comp->data[i]);
639
					if (comp->data[i] > max)
640
						max = comp->data[i];
641
				}
642
			}
643
		}*/
644
 
645
		for (i = 0; i < whl; i++) {
646
			int v;
647
			if (comp->prec <= 8) {
648
				if (!comp->sgnd) {
649
					v = readuchar(f);
650
				} else {
651
					v = (char) readuchar(f);
652
				}
653
			} else if (comp->prec <= 16) {
654
				if (!comp->sgnd) {
655
					v = readushort(f, bigendian);
656
				} else {
657
					v = (short) readushort(f, bigendian);
658
				}
659
			} else {
660
				if (!comp->sgnd) {
661
					v = readuint(f, bigendian);
662
				} else {
663
					v = (int) readuint(f, bigendian);
664
				}
665
			}
666
			if (v > max)
667
				max = v;
668
			comp->data[i] = v;
669
		}
670
		comp->bpp = int_floorlog2(max) + 1;
671
	}
672
	fclose(f);
673
	return volume;
674
}
675
 
676
int volumetobin(opj_volume_t * volume, char *outfile) {
677
	int w, wr, wrr, h, hr, hrr, l, lr, lrr, max;
678
	int i,j, compno, nbytes;
679
	int offset, sliceno;
680
	FILE *fdest = NULL;
681
	FILE *fimgdest = NULL;
682
//	char *imgtemp;
683
	char name[256];
684
 
685
	for (compno = 0; compno < 1; compno++) { //Only one component
686
 
687
		fdest = fopen(outfile, "wb");
688
		if (!fdest) {
689
			fprintf(stdout, "[ERROR] Failed to open %s for writing\n", outfile);
690
			return 1;
691
		}
692
        fprintf(stdout,"[INFO] Writing outfile %s (%s) \n",outfile, volume->comps[0].bigendian ? "Bigendian" : "Little-endian");
693
 
694
		w = int_ceildiv(volume->x1 - volume->x0, volume->comps[compno].dx);
695
		wr = volume->comps[compno].w;
696
		wrr = int_ceildivpow2(volume->comps[compno].w, volume->comps[compno].factor[0]);
697
 
698
		h = int_ceildiv(volume->y1 - volume->y0, volume->comps[compno].dy);
699
		hr = volume->comps[compno].h;
700
		hrr = int_ceildivpow2(volume->comps[compno].h, volume->comps[compno].factor[1]);
701
 
702
		l = int_ceildiv(volume->z1 - volume->z0, volume->comps[compno].dz);
703
		lr = volume->comps[compno].l;
704
		lrr = int_ceildivpow2(volume->comps[compno].l, volume->comps[compno].factor[2]);
705
 
706
		max = (volume->comps[compno].prec <= 8) ? 255 : (1 << volume->comps[compno].prec) - 1;
707
 
708
		volume->comps[compno].x0 = int_ceildivpow2(volume->comps[compno].x0 - int_ceildiv(volume->x0, volume->comps[compno].dx), volume->comps[compno].factor[0]);
709
		volume->comps[compno].y0 = int_ceildivpow2(volume->comps[compno].y0 - int_ceildiv(volume->y0, volume->comps[compno].dy), volume->comps[compno].factor[1]);
710
		volume->comps[compno].z0 = int_ceildivpow2(volume->comps[compno].z0 - int_ceildiv(volume->z0, volume->comps[compno].dz), volume->comps[compno].factor[2]);
711
 
712
		if (volume->comps[0].prec <= 8) {
713
			nbytes = 1;
714
		} else if (volume->comps[0].prec <= 16) {
715
			nbytes = 2;
716
		} else {
717
			nbytes = 4;
718
		}
719
 
720
		//fprintf(stdout,"w %d wr %d wrr %d h %d hr %d hrr %d l %d lr %d lrr %d max %d nbytes %d\n Factor %d %d %d",w,wr,wrr,h,hr,hrr,l,lr,lrr,max,nbytes,volume->comps[compno].factor[0],volume->comps[compno].factor[1],volume->comps[compno].factor[2]);
721
 
722
		for(sliceno = 0; sliceno < lrr; sliceno++) {
723
			offset = (sliceno / lrr * l) + (sliceno % lrr);
724
            offset = wrr * hrr * offset;
725
			for (i = 0; i < wrr * hrr; i++) {
726
				int v = volume->comps[0].data[(i / wrr * w) + (i % wrr) + offset];
727
				if (volume->comps[0].bigendian) {
728
					for (j = nbytes - 1; j >= 0; j--) {
729
                        char byte = (char) ((v >> (j * 8)) & 0xff);
730
                        fwrite(&byte, 1, 1, fdest);
731
					}
732
				} else {
733
					for (j = 0; j <= nbytes - 1; j++) {
734
                        char byte = (char) ((v >> (j * 8)) & 0xff);
735
						fwrite(&byte, 1, 1, fdest);
736
					}
737
				}
738
			}
739
		}
740
 
741
	}
742
 
743
	fclose(fdest);
744
 
745
	sprintf(name,"%s.img",outfile);
746
	fimgdest = fopen(name, "w");
747
		if (!fimgdest) {
748
			fprintf(stdout, "[ERROR] Failed to open %s for writing\n", name);
749
			return 1;
750
		}
751
	fprintf(fimgdest, "Bpp\t%d\nColor Map\t2\nDimensions\t%d\t%d\t%d\nResolution(mm)\t%d\t%d\t%d\t\n",
752
		volume->comps[0].prec,wrr,hrr,lrr,volume->comps[0].dx,volume->comps[0].dy,volume->comps[0].dz);
753
 
754
	fclose(fimgdest);
755
	return 0;
756
}
757
/* -->> -->> -->> -->>
758
 
759
IMG IMAGE FORMAT
760
 
761
<<-- <<-- <<-- <<-- */
762
opj_volume_t* imgtovolume(char *fileimg, opj_cparameters_t *parameters) {
763
	int subsampling_dx =  parameters->subsampling_dx;
764
	int subsampling_dy =  parameters->subsampling_dy;
765
	int subsampling_dz =  parameters->subsampling_dz;
766
 
767
	int i, compno, w, h, l, numcomps = 1;
768
	int prec, max = 0, min = 0;
769
	float dx, dy, dz;
770
	char filename[100], tmpdirpath[100], dirpath[100], *tmp;
771
	char line[100], datatype[100];
772
	int bigendian;
773
 
774
	FILE *f = NULL;
775
	FILE *fimg = NULL;
776
	OPJ_COLOR_SPACE color_space;
777
	opj_volume_cmptparm_t cmptparm;	/* maximum of 1 component */
778
	opj_volume_t * volume = NULL;
779
	opj_volume_comp_t *comp = NULL;
780
 
781
	bigendian = 0;
782
	color_space = CLRSPC_GRAY;
783
 
784
	fimg = fopen(fileimg,"r");
785
	if (!fimg) {
786
		fprintf(stderr, "[ERROR] Failed to open %s for reading !!\n", fileimg);
787
		return 0;
788
	}
789
 
790
	//Fetch only the path
791
	strcpy(tmpdirpath,fileimg);
792
	if ((tmp = strrchr(tmpdirpath,'/')) != NULL){
793
		tmp++; *tmp='\0';
794
		strcpy(dirpath,tmpdirpath);
795
	} else {
796
		strcpy(dirpath,"./");
797
	}
798
 
799
	fseek(fimg, 0, SEEK_SET);
800
	while (!feof(fimg)) {
801
        fgets(line,100,fimg);
802
		//fprintf(stdout,"%s %d \n",line,feof(fimg));
803
		if (strncmp(line,"Image",5) == 0){
804
			sscanf(line,"%*s%*[ \t]%s",datatype);
805
		} else if (strncmp(line,"File",4) == 0){
806
			sscanf(line,"%*s %*s%*[ \t]%s",filename);
807
			strcat(dirpath, filename);
808
			strcpy(filename,dirpath);
809
		} else if (strncmp(line,"Min",3) == 0){
810
			sscanf(line,"%*s %*s%*[ \t]%d%*[ \t]%d",&min,&max);
811
			prec = int_floorlog2(max - min + 1);
812
		} else if (strncmp(line,"Bpp",3) == 0){
813
			sscanf(line,"%*s%*[ \t]%d",&prec);
814
		} else if (strncmp(line,"Color",5) == 0){
815
			sscanf(line, "%*s %*s%*[ \t]%d",&color_space);
816
		} else if (strncmp(line,"Dim",3) == 0){
817
			sscanf(line, "%*s%*[ \t]%d%*[ \t]%d%*[ \t]%d",&w,&h,&l);
818
		} else if (strncmp(line,"Res",3) == 0){
819
			sscanf(line,"%*s%*[ \t]%f%*[ \t]%f%*[ \t]%f",&dx,&dy,&dz);
820
		}
821
 
822
	}
823
	#ifdef VERBOSE
824
		fprintf(stdout, "[INFO] %s %d \t %d %d %d \t %f %f %f \t %d %d %d \n",filename,color_space,w,h,l,dx,dy,dz,max,min,prec);
825
	#endif
826
	fclose(fimg);
827
 
828
	/* error control */
829
	if ( !prec || !w || !h || !l ){
830
		fprintf(stderr,"[ERROR] Unable to read IMG file correctly. Found some null values.");
831
		return NULL;
832
	}
833
 
834
	/* initialize volume components */
835
	memset(&cmptparm, 0, sizeof(opj_volume_cmptparm_t));
836
 
837
	cmptparm.prec = prec;
838
	cmptparm.bpp = prec;
839
	cmptparm.sgnd = 0;
840
	cmptparm.bigendian = bigendian;
841
	cmptparm.dcoffset = parameters->dcoffset;
842
	cmptparm.dx = subsampling_dx;
843
	cmptparm.dy = subsampling_dy;
844
	cmptparm.dz = subsampling_dz;
845
	cmptparm.w = w;
846
	cmptparm.h = h;
847
	cmptparm.l = l;
848
 
849
	/* create the volume */
850
	volume = opj_volume_create(numcomps, &cmptparm, color_space);
851
	if(!volume) {
852
		fprintf(stdout,"[ERROR] Unable to create volume");
853
		return NULL;
854
	}
855
 
856
	/* set volume offset and reference grid */
857
	volume->x0 = parameters->volume_offset_x0;
858
	volume->y0 = parameters->volume_offset_y0;
859
	volume->z0 = parameters->volume_offset_z0;
860
	volume->x1 = parameters->volume_offset_x0 + (w - 1) *	subsampling_dx + 1;
861
	volume->y1 = parameters->volume_offset_y0 + (h - 1) *	subsampling_dy + 1;
862
	volume->z1 = parameters->volume_offset_z0 + (l - 1) *	subsampling_dz + 1;
863
 
864
	max = 0;
865
	/* set volume data */
866
	f = fopen(filename, "rb");
867
	if (!f) {
868
		fprintf(stderr, "[ERROR] Failed to open %s for reading !!\n", filename);
869
		fclose(f);
870
		return 0;
871
	}
872
 
873
	/* BINARY */
874
	for (compno = 0; compno < volume->numcomps; compno++) {
875
		int whl = w * h * l;
876
		/* set volume data */
877
		comp = &volume->comps[compno];
878
 
879
		/*if (comp->prec <= 8) {
880
			if (!comp->sgnd) {
881
                unsigned char *data = (unsigned char *) malloc(whl * sizeof(unsigned char));
882
				fread(data, 1, whl, f);
883
				for (i = 0; i < whl; i++) {
884
					comp->data[i] = data[i];
885
					if (comp->data[i] > max)
886
						max = comp->data[i];
887
				}
888
				free(data);
889
			} else {
890
				char *data = (char *) malloc(whl);
891
				fread(data, 1, whl, f);
892
				for (i = 0; i < whl; i++) {
893
					comp->data[i] = data[i];
894
					if (comp->data[i] > max)
895
						max = comp->data[i];
896
				}
897
				free(data);
898
			}
899
		} else if (comp->prec <= 16) {
900
			if (!comp->sgnd) {
901
                unsigned short *data = (unsigned short *) malloc(whl * sizeof(unsigned short));
902
				int leido = fread(data, 2, whl, f);
903
				if (!leido)	{
904
					free(data);	fclose(f);
905
					return NULL;
906
				}
907
 
908
				for (i = 0; i < whl; i++) {
909
					if (bigendian)	//(c1 << 8) + c2;
910
						comp->data[i] = data[i];
911
					else{			//(c2 << 8) + c1;
912
						comp->data[i] = ShortSwap(data[i]);
913
					}
914
					if (comp->data[i] > max)
915
						max = comp->data[i];
916
				}
917
				free(data);
918
			} else {
919
				short *data = (short *) malloc(whl);
920
				int leido = fread(data, 2, whl, f);
921
				if (!leido)	{
922
					free(data);	fclose(f);
923
					return NULL;
924
				}
925
				for (i = 0; i < whl; i++) {
926
					if (bigendian){	//(c1 << 8) + c2;
927
						comp->data[i] = data[i];
928
					}else{			//(c2 << 8) + c1;
929
						comp->data[i] = (short) ShortSwap((unsigned short) data[i]);
930
					}
931
					if (comp->data[i] > max)
932
						max = comp->data[i];
933
				}
934
				free(data);
935
			}
936
		} else {
937
			if (!comp->sgnd) {
938
                unsigned int *data = (unsigned int *) malloc(whl * sizeof(unsigned int));
939
				int leido = fread(data, 4, whl, f);
940
				if (!leido)	{
941
					free(data);	fclose(f);
942
					return NULL;
943
				}				for (i = 0; i < whl; i++) {
944
					if (!bigendian)
945
						comp->data[i] = LongSwap(data[i]);
946
					else
947
						comp->data[i] = data[i];
948
					if (comp->data[i] > max)
949
						max = comp->data[i];
950
				}
951
				free(data);
952
			} else {
953
				int leido = fread(comp->data, 4, whl, f);
954
				if (!leido)	{
955
					fclose(f);
956
					return NULL;
957
				}
958
				for (i = 0; i < whl; i++) {
959
					if (!bigendian)
960
						comp->data[i] = (int) LongSwap((unsigned int) comp->data[i]);
961
					if (comp->data[i] > max)
962
						max = comp->data[i];
963
				}
964
			}
965
		}*/
966
 
967
		for (i = 0; i < whl; i++) {
968
			int v;
969
			if (comp->prec <= 8) {
970
				if (!comp->sgnd) {
971
					v = readuchar(f);
972
				} else {
973
					v = (char) readuchar(f);
974
				}
975
			} else if (comp->prec <= 16) {
976
				if (!comp->sgnd) {
977
					v = readushort(f, bigendian);
978
				} else {
979
					v = (short) readushort(f, bigendian);
980
				}
981
			} else {
982
				if (!comp->sgnd) {
983
					v = readuint(f, bigendian);
984
				} else {
985
					v = (int) readuint(f, bigendian);
986
				}
987
			}
988
			if (v > max)
989
				max = v;
990
			comp->data[i] = v;
991
		}
992
		comp->bpp = int_floorlog2(max) + 1;
993
	}
994
	fclose(f);
995
	return volume;
996
}
997